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Protein Analysis (Subscribe)

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EMBL Bioinformatic Harvester

http://harvester.embl.de

Collection of human (swall) proteins, crossreferences to major prediction servers. Supported predictions from: smart, string, blast, swall, mapview, sosui, ipsort and ncbi conserved domains.

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Molecular Biology Tools Online

http://mbt.biobitfield.com/

Includes WebOligoMelt (Annealing temperature of oligonucleotides), Virtual Ribosome (translate nucleotide sequences into peptides), and SeqScanGraph (graph melting temperature along nucleotide chain).

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Munich Information Center for Protein Sequences (MIPS)

http://mips.gsf.de/

Bioinformatics research group offering organism specific information (Yeast, Cress) as well as search tools for public databases.

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Proteomics Analysis: Z3 and LabOnWeb's Z3OnWeb

http://www.2dgels.com

Proteomic analysis for analyzing 2D-Gel images. Use Compugen's Z3 or Z3OnWeb utitlities for automatic spot detection and registration (=alignment) of protein gel images to match the spots.

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Protonet

http://www.protonet.cs.huji.ac.il

Provides automatic hierarchical classification of proteins sequences.

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Quaternary Structure Prediction

http://mericity.com/

An experimental bioinformatics server. Classifies protein sequences as homodimers or non-homodimers. Applications: metabolic reconstruction, protein structure and function assignment, and drug-design.

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The Protein Information Resource

http://pir.georgetown.edu

In collaboration with the Munich Information Center for Protein Sequences (MIPS) and the Japanese International Protein Sequence Database (JIPID) maintains the PIR-International Protein Sequence Database --- a comprehensive, annotated, and non-redundant set of protein sequence databases in which entries are classified into family groups and alignments of each group are available.

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