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BIOBASE

http://www.gene-regulation.com/

The focus of the GBF project "Molecular Bioinformatics of Gene Regulation" are regulatory genomic signals and regions that govern transcriptional control based on TRANSFAC - The Transcription Factor Database. It compiles data about gene regulatory DNA sequences and protein factors binding to and acting through them.

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BioGIS: Israel Biodiversity Information System

http://www.biogis.huji.ac.il/

Israel Biodiversity Information System (BioGIS) is a Geographical Information System established to create a national database of the flora and fauna of Israel. The system is open to the public and provides advanced tools for querying, analyzing, modeling, and visualizing patterns of species distribution.

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Biomolecular Interaction Network Database (BIND)

http://bind.ca

BIND is a database designed to store full descriptions of interactions, molecular complexes and pathways.

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Center Structural Biology: Programs and Tools

http://www.csb.yale.edu

User guides and worked examples for software applications in structural and molecular biology - from Yale Univ.

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CUBIC: Columbia University Bioinformatics Center

http://cubic.bioc.columbia.edu/

Features PredictProtein service for sequence analysis and protein structure prediction, META for single-page interface to validated sequence analysis, PredictNLS for prediction and analysis of nuclear localization signals, EVA for evaluation of automatic protein structure prediction servers, and DSSPcont for continuous assignment of protein secondary structure.

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Database of Interacting Proteins (DIP)

http://dip.doe-mbi.ucla.edu/

The DIP catalogs experimentally determined interactions between proteins while combining information from a variety of sources to create a single, consistent set of protein-protein interactions.

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Geneva Bioinformatics (GeneBio) S.A.

http://www.genebio.com/

GeneBio provides proteomics software tools and databases including SWISS-PROT, PROSITE, SWISS-2DPAGE and Melanie. We also offer a secure version of ExPASy molecular biology web server.

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GenomeNet WWW server

http://www.genome.ad.jp

Very nice collection of bioinformatics tools, including BLAST and MOTIF - from Kyoto Univ.

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genomesapiens.org

http://www.genomesapiens.org/

presents the HIGH database, a curated annotation of human DNA regions that are proven to code for Immunoglobulin-superfamily proteins.

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GenomeSURF

http://surf.gi.k.u-tokyo.ac.jp

Colorful visualization of Sequence Frequency. Includes Human and Mouse Genomic Sequences. Evaluate uniqueness of graphically.

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